MuscleX

Muscle X

  • Installing MuscleX
  • Application Suite
    • X-Ray Viewer
    • Equator
    • Quadrant Folding
      • Introduction
      • How it works
      • How to use
      • Background Subtraction
    • Projection Traces
    • Scanning Diffraction (DI)
    • Total Diffracted Intensity
    • Add Intensities Single/Multiple Experiment
    • Common Settings
    • Image Processing Functions
    • Deprecated: Diffraction Centroids
  • Utilities
  • Release Notes
  • Project Credits
MuscleX
  • Application Suite
  • Quadrant Folding
  • View page source

Quadrant Folding

  • Introduction
    • More Details
  • How it works
    • Prerequisites
    • Processing pipeline
  • How to use
    • Workflow at a glance
    • Step 1 — Open an image or folder
    • Step 2 — Choose an output directory
    • Step 3 — Set center and rotation on a reference image
    • Step 4 — Detect alignment across the folder
    • Step 5 — Fix individual misaligned images
    • Step 6 — Inspect the result and switch display modes
    • Step 7 — Configure background subtraction (optional)
    • Step 8 — Process the whole folder and collect output files
    • Methods Reference
    • Other features
    • Headless Mode
  • Background Subtraction
    • Introduction
    • Where to find the controls
    • Processing options
    • Manual Setting | One Method
    • Manual Setting | Transition
    • Automated Processing
    • Recommended workflow using Automated Processing
    • Subtraction methods and parameters
    • Automated processing details
    • Examples
    • Headless mode
    • Related topics
Previous Next

© Copyright 2025, BioCAT.

Built with Sphinx using a theme provided by Read the Docs.